Items where Subject is "C Biological Sciences > C500 Microbiology"

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16S rRNA gene ANAMMOX Abiotic conditions Acne Acne vulagaris Actinobacteria Agriculture Alphaproteobacteria Amino Acid Sequence Anti-tumor Antibiotics susceptibility Aquatic environments Archaea BITOX BOTOX Bacillariophyta Bacillus Bacillus (bacterium) Bacillus licheniformis Bacillus sp. Bacillus subtilis Bacteria Bacteria (microorganisms) Bacterial Physiological Phenomena Bacterial Proteins Bacterial Typing Techniques Bacterial biofilm Bacterial removal Bacteriocin Bacteriology Bacterium Base Sequence Benghazi Benghazi region Betaproteobacteria Biodegradation, Environmental Biodiversity Biofilm formation Biofilms Biogeochemical Blotting, Southern Boundary shear stress Callianassa subterranea Carbohydrates Carbon Carrier Proteins Cation Transport Proteins Cells, Cultured Chromosome Mapping Chromosomes, Bacterial Cloning Cloning, Molecular Cluster Analysis Colicin Colicin E3 Colletotrichum Colony Count, Microbial Community structures Compositional characterization Compositional shifts Conjugation, Genetic Conservation of Natural Resources Conserved Sequence Crops Cryoconite Cyanobacteria Cycloclasticus DGGE DNA DNA DNA hybridization DNA Helicases DNA Nucleotidyltransferases DNA Primers DNA Probes DNA Transposable Elements DNA fragment DNA fragment, bacterial genetics DNA sequence DNA template DNA, Bacterial DNA, Fungal DNA, Ribosomal DNA, plasmid, article DNA-Binding Proteins DNA-Directed DNA Polymerase Decapoda (Crustacea) Deltaproteobacteria Denaturing gradient gel electrophoresis Denitrification Detection of Escherichia coli DNA Diatoms Dissimilatory nitrate reduction Drinking water Drinking water distribution system Drinking water distribution systems Drug Resistance, Microbial East Africa Eastern Hemisphere Ecosystem Electrophoresis England Environmental Environmental Microbiology Environmental Pollutants Enzymes Equipment Design Escherichia coli Eschericia coli Essex England Estuaries Estuarine sediments Eurasia Europe Evaluation Studies Evolution Evolution, Molecular Fabaceae Fatty Acids Fertilizers Fish Fish analysis Flow condition Fluorescent in situ hybridization Fresh Water Functional genes Fungal Proteins Fungi Fusarium Fusarium solani Gammaproteobacteria Gels Gene Amplification Gene Transfer, Horizontal Genes Genes, Bacterial Genes, Regulator Genetic Techniques Genetic Variation Genetic potential Geologic Sediments Glacier Glomales Glomerales Glomerella tucumanensis Glycoproteins Gram negative bacterium Gram-Negative Bacteria Gram-Positive Bacteria Great Britain Haematonectria haematococca Haematonectria haematococca mpVI Haemophilus influenzae Haplotypes Haptophyceae Heterotrophic activity Hydrocarbons Hydrocarbons, Aromatic In-situ Indonesia Inoculation, Soils, carbon Inorganic nitrogen Insect debridement therapy Kakamega Kenya L.sericata Linkage (Genetics) Listeria Listeriosis Lucilia sericata Marine ecosystems Mass Spectrometry Membrane Proteins Mercury Methacrylates Microbial biofilm Microbial diversity Microbiology Microscopy Models, Biological Models, Genetic Molecular Sequence Data Molecular structure Mosaicism Mycelium Near-wall Nectria Negibacteria Nitrate concentration Nitrate reduction Nitrite Reductases Nitrite reductase genes Nitrite reductase genes, Estuaries, messenger RNA Nitrogen Nitrogen Compounds Nitrogen Fixation Nitrogen compounds Nitrogen removal Nucleic Acid Conformation Nucleic Acid Hybridization Nutrient gradients Ochrobactrum Ochrobactrum anthropi Oleispira antarctica Oligonucleotide Probes Organic carbon Outer membrane proteins Oxidation-Reduction Paracoccus Peas Pesticides Phosphates Phospholipids Photoautotrophs Phylogeny Pilot scale Pipe Pipe flow Pisum sativum Plant Diseases Plasmids Plasmids, Bacteria (microorganisms) Polymerase Chain Reaction Polymorphism, Restriction Fragment Length Polysaccharides Posibacteria Potable water Process activities Prokaryota Protein level Proteins Proteobacteria Proteomics Pseudoalteromonas Pseudomonas aeruginosa Pyrimidines Quantitative PCR RNA RNA 16S RNA 16S, abundance RNA 16S, ammonification RNA 16S, article RNA 16S, bacterium RNA 16S, denitrification RNA 16S, microbial community, agriculture RNA 18S, arbuscular mycorrhiza RNA fingerprinting RNA sequence RNA, Acinetobacter RNA, Antisense RNA, Bacterial RNA, Good agricultural practice (GAP) RNA, Messenger RNA, Polymorphism, Soils, RNA 16S, bacterial disease RNA, Ribosomal, 16S RNA, Ribosomal, 18S RNA, ammonification RNA, amplicon Recombinases Recombination, Genetic Regression analysis Replication Origin Reproducibility of Results Reverse Transcriptase Polymerase Chain Reaction Reverse transcription Ribonuclease Ribosome River Humber Roseobacter SNAREs Sampling devices Saudi Arabia Seawater Sediments Sediments, Bacterial community Sediments, Gene sequences, Genes, DNA Sequence Analysis, DNA Sequence Homology, Nucleic Acid Sequence Homology, Nucleic Acid, Eurasia Shewanella Shewanella sp. Simultaneous analysis, Biofilms Slurry experiment Soil Soil Microbiology Soil Microbiology, Bacteria (microorganisms) Soil Pollutants Species Specificity Species Specificity, Bacteria (microorganisms) Sphingomonas Sub-Saharan Africa Substrate Specificity, Acinetobacter Sulfolobus Support, Non-U.S. Gov't Support, Non-U.S. Gov't, Bacteria (microorganisms) Systems Theory Taq polymerase, DNA Primers Tellurium Temperature, Alcanivorax Thailand, Bacteria (microorganisms) Thalassolituus Thalassolituus oleivorans Trans-Activators Trans-Activators, Bacteria (microorganisms) Transcription Transcription, Estuarine sediments Transcription, Genetic Translation Transposases Transposon Resolvases Treatment-specific shifts, Biofilms, beta glucosidase Trees Triticum aestivum Triticum, Bacteria (microorganisms) Tropical Climate, Africa Tuberculosis Tyrosine, Bacteria (microorganisms) United Kingdom United Kingdom, Bacterial Proteins United Kingdom, Biodegradation, Environmental United States United kingdom, Ammonium compounds Upogebia deltaura Variation (Genetics) Variation (Genetics), Bacteria (microorganisms) Variation (Genetics), United Kingdom, Bacteria (microorganisms) Variovorax Vibrio Vibrio parahaemolyticus Vibrio sp. Vibrio, Alphaproteobacteria Virulence, Fungi Wastewater treatment, Nitrates, ammonia Water Microbiology Water Microbiology, Bacteria (microorganisms) Water Microbiology, Colne Estuary Water Pollutants, Chemical, Bacteria (microorganisms) Water Pollution, Chemical Water Supply, Bacteria (microorganisms) Water distribution systems Water supply, Biofilters, 4',6 diamidino 2 phenylindole Western Europe, Bacillariophyta Western Europe, Bacteria (microorganisms) Western Europe, Deltaproteobacteria World, Bacteria (microorganisms) Wounds Y-chromosonal STR Zea mays ac acne acne vulgaris active site agricultural management agricultural procedures amber ammonium ancient DNA antibacterial antibacterial activity antibacterial potency antibiotic resistance antibiotic susceptibility arbuscular mycorrhiza aromatic hydrocarbon article autosomal STR autotrophy azoxystrobin bacteria in experimental degradation bacterial DNA bacterial count bacterial flora bacterial gene bacterial genetics bacterial membranes bacterial metabolism bacterial protein bacteriophage bacterium bacterium colony bacterium isolate bacterium isolation benthic environment benthos bioavailability biodegradation biodiversity biofilm biofilms; denaturing gradient gel electrophoresis;drinking water; enumeration; water age; water quality biomass bioremediation bioturbation bladder biopsies bmjdoi botulinum neurotoxin burrow cancer carbohydrate carbohydrate derivative carbohydrate metabolism carbon carbon cycle carbon isotope carboxy terminal sequence catalysis causal microbe cell envelope cell level cellular organisms chromogenic media chromosome classification clinical isolates cluster analysis coastal sediment colicin E3 colonisation community composition community structure comparative study competitive interactions complementary DNA concentration (composition) concentration (parameters) confocal microscopy conjugation consensus sequence controlled study crustacean cyclic polypeptides darkness degradation degradation of 700 year old human bone denaturing gradient gel electrophoresis denitrification destruction of archaeological bone detection method diatom dna sequence drinking water drinking water, biofilm drug resistance ecological niche ecology ecosystem electrokinesis electrophoresis endotoxins environmental isolates environmental monitoring enzyme activity enzyme localization enzyme specificity error escherichia coli estuarine ecosystem estuarine environment estuarine sediment estuarine species estuary ethanol evolution excretion/secretion exopolymer expression vector fatty acid fertilizer fertilizer application fluorescence analysis fluorescence in situ hybridization fungal DNA, DNA fungal community fungal disease fungal gene fungal virulence fungicide fungus fungus culture fungus isolation gene gene amplification gene expression gene expression regulation gene function gene identification gene isolation gene library gene pool gene product gene replication gene sequence gene transfer genetic analysis genetic conservation genetic data genetic linkage genetic marker genetic polymorphism genetic recombination genetic transcription genetic variability genetic variance genetics genome genotype geographic distribution geography glacial environment glycoprotein gram negative bacterium gram positive bacterium growth inhibition growth, development and aging harvesting helicase helicase, article horizontal gene transfer host hybridization hydrocarbon inoculation insecticide resistance interstitial cystitis isolates isolation and purification isotope labeling isotretinoin treatment laboratory evaluation lake water land use larval ES larval excretion larval secretion legume light exposure management practice marine environment medicinal maggot Lucilia sericata mercury mercury, antibiotic resistance mercury, article mercury, bacterial metabolism messenger RNA metabolism metabolite metal metabolism methanol extraction residue, article methodology microalga microbe recovery microbes microbial activity microbial biomass microbial community microbial community structure microbial degradation microbial diversity microbial ecology microbial growth microbial metabolism microbial population dynamics microbiology microcosm microflora microscope mineralization mode of action molecular analysis molecular biology molecular cloning molecular diagnosis molecular dynamics molecular genetics molecular phylogeny mosaicism multigene family multivariate analysis mutagenesis napA gene narG gene nervous system nirS gene nitrate nitrate reductase nitrite nitrite reductase nitrogen nitrogen cycle nonhuman nontarget organism note nrfa gene nucleotide sequence nutrient availability nutrient cycling nutrient flux oligonucleotide oligonucleotide probe oligonucleotide, amino acid sequence operator gene operon oxic/anoxic interface pathogenic bacteria pathogenicity pea persistence pesticide pesticide, 25s rrna gene petroleum petroleum, Alcanivorax phenotype phosphate phospholipid photosynthesis phylogenetics phylogeny physical property physiology phytobenthos plant disease plasmid plasmid dna plowing pollutant, Alcanivoraceae pollution polyacrylamide gel electrophoresis polychlorinated biphenyl polymer, Bacteria (microorganisms) polymerase chain reaction polymerase chain reaction, agricultural land polymerase chain reaction, article polymorphism polymyxin polymyxin B polymyxin nonapeptide polysaccharide population primary production primer DNA, abundance primer DNA, article principal component analysis priority journal productivity promoter region protein protein engineering qualitative analysis quantitative analysis real time polymerase chain reaction recombinase recovery bone reduction regulator gene relative abundance replicon reproducibility resolvase resolvase, adaptation restriction enzyme analysis restriction fragment restriction fragment length polymorphism reverse transcription polymerase chain reaction review, Bacillus review, DNA Transposable Elements ribonuclease ribosomal ribosome DNA ribosome RNA salinity sampling screening sea water, article seashore seasonal variation sediment sediment analysis sediment, Animals sediment, Bacteria sediment-water interface sequence analysis sequence analysis, Bacillus licheniformis sequence analysis, Bacteria sequence homology sequence homology, Amino Acid Sequence sequence homology, Base Sequence shear stress short survey, Ecology silver colloid skin bacteria soil soil analysis, Agriculture soil microflora soil microflora, Base Sequence soil microorganism soil pollutant soil pollution soil pollution, Bacillus sp. soil pollution, Base Sequence soil pollution, Biodegradation, Environmental soil type, agriculture soil, Agriculture species diversity species diversity, agricultural species species diversity, animal species endemicity species habitat species richness, Bacteria standard, DNA, Complementary stramenopiles summer synapse technique, Bacteria tellurite temperature textural attachment preferences tidal cycle, Colne Estuary toxicity test, article toxicity, Crystallization trans acting factor, article transposase, article transposon transposon, Bacteriophages transposons tree tropic climate, Agriculture tropical region unclassified drug, article unclassified drug, bacterium water column, Fiji water pollutant, Bacteria water pollution, Bacteria water sampling water supply, Bacteria water supply, article wheat winter, Agriculture
Number of items at this level: 1202.

16S rRNA gene

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

ANAMMOX

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Abiotic conditions

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Acne

Ryan-Kewley, Angela E. (2011) Microbial ecology of Propionibacterium acnes in patients undergoing treatment with isotretinoin. PhD thesis, University of Lincoln.

Acne vulagaris

Thomas, Angela E. and Williams , D. Ross and Hepburn , Neil C. and Watts, Toni and Dixon , Ron A. (2005) Staphylococcal microbiota from the skin of patients: changes associated with treatment by Isotretinoin. In: 15th European Congress of Clinical Microbiology and Infectious Diseases , 01 April to 15 April, 2005, Copenhagen.

Actinobacteria

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Agriculture

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Alphaproteobacteria

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Amino Acid Sequence

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Anti-tumor

Lancaster, Lorna and Wintermeyer, Wolfgang and Rodnina, Marina (2007) Colicins and their potential in cancer treatment. Blood, Cells, Molecules and Diseases, 38 (1). pp. 15-18. ISSN 1079-9796

Antibiotics susceptibility

Daramola, Bukola A. and Williams, Ross and Dixon, Ron A. (2009) In vitro antibiotic susceptibility of Vibrio parahaemolyticus from environmental sources in Northern England. International Journal of Antimicrobial Agents, 34 (5). pp. 499-500. ISSN 0924-8579

Aquatic environments

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Archaea

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Structure and diversity of bacterial, eukaryotic and archaeal communities in glacial cryoconite holes from the Arctic and the Antarctic. FEMS Microbiology Ecology, 82 (2). pp. 254-267. ISSN 0168-6496

BITOX

Ferrari, Enrico and Maywood, Elizabeth S. and Restani, Laura and Caleo, Matteo and Pirazzini, Marco and Rossetto, Ornella and Hastings, Michael H. and Niranjan, Dhevahi and Schiavo, Giampietro and Davletov, Bazbek (2011) Re-assembled botulinum neurotoxin inhibits CNS Functions without systemic toxicity. Toxins, 3 (4). pp. 345-355. ISSN 2072-6651

BOTOX

Ferrari, Enrico and Maywood, Elizabeth S. and Restani, Laura and Caleo, Matteo and Pirazzini, Marco and Rossetto, Ornella and Hastings, Michael H. and Niranjan, Dhevahi and Schiavo, Giampietro and Davletov, Bazbek (2011) Re-assembled botulinum neurotoxin inhibits CNS Functions without systemic toxicity. Toxins, 3 (4). pp. 345-355. ISSN 2072-6651

Bacillariophyta

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Bacillus

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Bacillus (bacterium)

Hassan, Muhammad Nadeem and Osborn, A. Mark and Hafeez, Fauzia Yusuf (2010) Molecular and biochemical characterization of surfactin producing Bacillus species antagonistic to Colletotrichum falcatum Went causing sugarcane red rot. African Journal of Microbiology Research, 4 (20). pp. 2137-2142. ISSN 1996-0808

Bacillus licheniformis

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Bacillus sp.

Hassan, Muhammad Nadeem and Osborn, A. Mark and Hafeez, Fauzia Yusuf (2010) Molecular and biochemical characterization of surfactin producing Bacillus species antagonistic to Colletotrichum falcatum Went causing sugarcane red rot. African Journal of Microbiology Research, 4 (20). pp. 2137-2142. ISSN 1996-0808

Bacillus subtilis

Hassan, Muhammad Nadeem and Osborn, A. Mark and Hafeez, Fauzia Yusuf (2010) Molecular and biochemical characterization of surfactin producing Bacillus species antagonistic to Colletotrichum falcatum Went causing sugarcane red rot. African Journal of Microbiology Research, 4 (20). pp. 2137-2142. ISSN 1996-0808

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Bacteria

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Williams, D. Ross and Chanos, Panagiotis (2012) Application of anti-listerial bacteriocins: monitoring enterocin expression by multiplex relative reverse transcription–PCR. Biochemical Society Transactions, 40 (6). pp. 1544-1548. ISSN 0300-5127

Bacteria (microorganisms)

Etebu, Ebimieowei and Osborn, A. Mark (2010) Molecular quantification of the pea footrot disease pathogen (Nectria haematococca) in agricultural soils. Phytoparasitica, 38 (5). pp. 447-454. ISSN 0334-2123

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Hassan, Muhammad Nadeem and Osborn, A. Mark and Hafeez, Fauzia Yusuf (2010) Molecular and biochemical characterization of surfactin producing Bacillus species antagonistic to Colletotrichum falcatum Went causing sugarcane red rot. African Journal of Microbiology Research, 4 (20). pp. 2137-2142. ISSN 1996-0808

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

Bacterial Physiological Phenomena

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Bacterial Proteins

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Bacterial Typing Techniques

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Bacterial biofilm

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Bacterial removal

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Bacteriocin

Lancaster, Lorna and Wintermeyer, Wolfgang and Rodnina, Marina (2007) Colicins and their potential in cancer treatment. Blood, Cells, Molecules and Diseases, 38 (1). pp. 15-18. ISSN 1079-9796

Bacteriology

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Bacterium

Chanos, P. and Williams, D. R. (2011) Anti-Listeria bacteriocin-producing bacteria from raw ewe’s milk in northern Greece. Journal of Applied Microbiology, 110 (3). pp. 757-768. ISSN 1364-5072

Base Sequence

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Benghazi

Elmrghni, Samir and Dixon, R. A. and Williams, D. R. (2011) Genetic data provided by 15 autosomal STR loci in the Libyan population living in Benghazi. In: 7th National FORREST Conference, 29 - 30 June 2011, Nottingham, UK.

Benghazi region

Elmrghni, Samir and Dixon, R. A. and Williams, D. R. (2010) Haplotypes for 17 Y-chromosomal STR loci in a population from eastern Libya (Benghazi region). In: 7th International Y Chromosome User Workshop and 4th International EMPOP, 22 - 24 April 2010, Berlin, Germany.

Betaproteobacteria

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Biodegradation, Environmental

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

Biodiversity

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Biofilm formation

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Biofilms

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Biogeochemical

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Blotting, Southern

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Boundary shear stress

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Callianassa subterranea

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Carbohydrates

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Carbon

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Carrier Proteins

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Cation Transport Proteins

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Cells, Cultured

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Chromosome Mapping

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Chromosomes, Bacterial

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Cloning

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Cloning, Molecular

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Cluster Analysis

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Colicin

Lancaster, Lorna and Wintermeyer, Wolfgang and Rodnina, Marina (2007) Colicins and their potential in cancer treatment. Blood, Cells, Molecules and Diseases, 38 (1). pp. 15-18. ISSN 1079-9796

Colicin E3

Lancaster, Lorna and Savelsbergh, Andreas and Kleanthous, Colin and Wintermeyer, Wolfgang and Rodnina, Marina (2008) Colicin E3 cleavage of 16S rRNA impairs decoding and accelerates tRNA translocation on Escherichia coli ribosomes. Molecular Microbiology, 69 (2). pp. 390-401. ISSN 0950-382X

Colletotrichum

Hassan, Muhammad Nadeem and Osborn, A. Mark and Hafeez, Fauzia Yusuf (2010) Molecular and biochemical characterization of surfactin producing Bacillus species antagonistic to Colletotrichum falcatum Went causing sugarcane red rot. African Journal of Microbiology Research, 4 (20). pp. 2137-2142. ISSN 1996-0808

Colony Count, Microbial

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Community structures

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Compositional characterization

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Compositional shifts

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Conjugation, Genetic

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Conservation of Natural Resources

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Conserved Sequence

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Crops

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Cryoconite

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Structure and diversity of bacterial, eukaryotic and archaeal communities in glacial cryoconite holes from the Arctic and the Antarctic. FEMS Microbiology Ecology, 82 (2). pp. 254-267. ISSN 0168-6496

Cyanobacteria

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Cycloclasticus

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

DGGE

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

DNA

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

DNA DNA hybridization

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

DNA Helicases

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

DNA Nucleotidyltransferases

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

DNA Primers

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

DNA Probes

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

DNA Transposable Elements

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

DNA fragment

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

DNA fragment, bacterial genetics

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

DNA sequence

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

DNA template

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

DNA, Bacterial

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

DNA, Fungal

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

DNA, Ribosomal

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

DNA, plasmid, article

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

DNA-Binding Proteins

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

DNA-Directed DNA Polymerase

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Decapoda (Crustacea)

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Deltaproteobacteria

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Denaturing gradient gel electrophoresis

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Denitrification

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Detection of Escherichia coli DNA

Dixon, Ron and Agarwal, M. (2010) Detection of Escherichia coli DNA from interstitial cystitis bladder biopsies provides little evidence of a causal microbe. The Internet Journal of Urology, 7 (1). ISSN 1528-8390

Diatoms

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Dissimilatory nitrate reduction

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Drinking water

Deines, P. and Sekar, P. and Jensen, H. S. and Tait, S. and Boxall, J. B. and Osborn, A. M. and Biggs, C. A. (2010) MUWS (Microbiology in urban water systems): an interdisciplinary approach to study microbial communities in urban water systems. Drinking Water Engineering and Science, 3 (2). pp. 91-99. ISSN 1996-9457

Drinking water distribution system

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Drinking water distribution systems

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Drug Resistance, Microbial

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

East Africa

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Eastern Hemisphere

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Ecosystem

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Electrophoresis

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

England

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Environmental

Daramola, Bukola A. and Williams, Ross and Dixon, Ron A. (2009) In vitro antibiotic susceptibility of Vibrio parahaemolyticus from environmental sources in Northern England. International Journal of Antimicrobial Agents, 34 (5). pp. 499-500. ISSN 0924-8579

Environmental Microbiology

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

Environmental Pollutants

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

Enzymes

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Equipment Design

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Escherichia coli

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Eschericia coli

Dixon, Ron (2008) Role of the cell envelope in the antibacterial activities of cyclic polypeptides against Eschericia coli. In: 2nd World Conference on Magic Bullets, 3rd - 5th October 2008, Nuremberg, Germany.

Essex England

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Estuaries

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Estuarine sediments

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Eurasia

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Europe

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Evaluation Studies

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Evolution

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Evolution, Molecular

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Fabaceae

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Fatty Acids

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Fertilizers

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Fish

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Fish analysis

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Flow condition

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Fluorescent in situ hybridization

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Fresh Water

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Functional genes

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Fungal Proteins

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Fungi

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Fusarium

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Fusarium solani

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Etebu, Ebimieowei and Osborn, A. Mark (2010) Molecular quantification of the pea footrot disease pathogen (Nectria haematococca) in agricultural soils. Phytoparasitica, 38 (5). pp. 447-454. ISSN 0334-2123

Gammaproteobacteria

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Gels

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Gene Amplification

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Gene Transfer, Horizontal

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Genes

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Genes, Bacterial

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Genes, Regulator

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Genetic Techniques

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Genetic Variation

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Genetic potential

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Geologic Sediments

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

Glacier

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Structure and diversity of bacterial, eukaryotic and archaeal communities in glacial cryoconite holes from the Arctic and the Antarctic. FEMS Microbiology Ecology, 82 (2). pp. 254-267. ISSN 0168-6496

Glomales

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Glomerales

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Glomerella tucumanensis

Hassan, Muhammad Nadeem and Osborn, A. Mark and Hafeez, Fauzia Yusuf (2010) Molecular and biochemical characterization of surfactin producing Bacillus species antagonistic to Colletotrichum falcatum Went causing sugarcane red rot. African Journal of Microbiology Research, 4 (20). pp. 2137-2142. ISSN 1996-0808

Glycoproteins

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Gram negative bacterium

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Gram-Negative Bacteria

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Gram-Positive Bacteria

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Great Britain

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Haematonectria haematococca

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Etebu, Ebimieowei and Osborn, A. Mark (2010) Molecular quantification of the pea footrot disease pathogen (Nectria haematococca) in agricultural soils. Phytoparasitica, 38 (5). pp. 447-454. ISSN 0334-2123

Haematonectria haematococca mpVI

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Etebu, Ebimieowei and Osborn, A. Mark (2010) Molecular quantification of the pea footrot disease pathogen (Nectria haematococca) in agricultural soils. Phytoparasitica, 38 (5). pp. 447-454. ISSN 0334-2123

Haemophilus influenzae

Dixon, Ron (2008) Outer membrane protein analysis of ampicillin-resistant isolates of Haemophilus influenzae from Saudi Arabia. Journal of Infection and Public Health, 1 (1). pp. 45-50. ISSN UNSPECIFIED

Haplotypes

Elmrghni, Samir and Dixon, R. A. and Williams, D. R. (2010) Haplotypes for 17 Y-chromosomal STR loci in a population from eastern Libya (Benghazi region). In: 7th International Y Chromosome User Workshop and 4th International EMPOP, 22 - 24 April 2010, Berlin, Germany.

Haptophyceae

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Heterotrophic activity

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Hydrocarbons

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

Hydrocarbons, Aromatic

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

In-situ

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Indonesia

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

Inoculation, Soils, carbon

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Inorganic nitrogen

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Insect debridement therapy

Barnes, K. M. and Gennard, Dorothy and Dixon, Ron (2010) The antibacterial potency of the medicinal maggot Lucilia sericata (Meigen): variation in laboratory evaluation. Journal of Microbiological Methods, 82 (3). pp. 234-237. ISSN 0167-7012

Kakamega

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Kenya

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

L.sericata

Barnes, K. M. and Dixon, Ron and Gennard, Dorothy (2009) A model of competitive interactions between L.sericata and pathogenic bacteria found on a corpse. In: European Association of Forensic Entomology, 9th - 12th June 2009, Uppsala, Sweden.

Linkage (Genetics)

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Listeria

Williams, D. Ross and Chanos, Panagiotis (2012) Application of anti-listerial bacteriocins: monitoring enterocin expression by multiplex relative reverse transcription–PCR. Biochemical Society Transactions, 40 (6). pp. 1544-1548. ISSN 0300-5127

Listeriosis

Williams, D. Ross and Chanos, Panagiotis (2012) Application of anti-listerial bacteriocins: monitoring enterocin expression by multiplex relative reverse transcription–PCR. Biochemical Society Transactions, 40 (6). pp. 1544-1548. ISSN 0300-5127

Lucilia sericata

Barnes, Katherine and Gennard, Dorothy and Dixon, Ron (2009) An assessment of the antibacterial activity in larval excretion/secretion from four carrion feeding species using Lucilia sericata (Meigen) as the marker species. In: BSAC Spring Meeting - Difficult to treat infections meeting; British Society of Antimicrobial Chemotherapy, 7th April 2009, Birmingham.

Marine ecosystems

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Mass Spectrometry

Graham, Ciaren and Graham, R. L. and McMullan, G. (2011) Proteomics in the microbial sciences. Bioengineered Bugs, 2 (1). pp. 17-30. ISSN 1949-1018

Membrane Proteins

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Mercury

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Methacrylates

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Microbial biofilm

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Microbial diversity

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Structure and diversity of bacterial, eukaryotic and archaeal communities in glacial cryoconite holes from the Arctic and the Antarctic. FEMS Microbiology Ecology, 82 (2). pp. 254-267. ISSN 0168-6496

Microbiology

Graham, Ciaren and Graham, R. L. and McMullan, G. (2011) Proteomics in the microbial sciences. Bioengineered Bugs, 2 (1). pp. 17-30. ISSN 1949-1018

Microscopy

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Models, Biological

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

Models, Genetic

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Molecular Sequence Data

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Molecular structure

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Mosaicism

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Mycelium

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Near-wall

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Nectria

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Negibacteria

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Nitrate concentration

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Nitrate reduction

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Nitrite Reductases

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Nitrite reductase genes

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Nitrite reductase genes, Estuaries, messenger RNA

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Nitrogen

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Nitrogen Compounds

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Nitrogen Fixation

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Nitrogen compounds

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Nitrogen removal

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Nucleic Acid Conformation

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Nucleic Acid Hybridization

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Nutrient gradients

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Ochrobactrum

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Ochrobactrum anthropi

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Oleispira antarctica

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Oligonucleotide Probes

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Organic carbon

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Outer membrane proteins

Dixon, Ron (2008) Outer membrane protein analysis of ampicillin-resistant isolates of Haemophilus influenzae from Saudi Arabia. Journal of Infection and Public Health, 1 (1). pp. 45-50. ISSN UNSPECIFIED

Oxidation-Reduction

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Paracoccus

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Peas

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Pesticides

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Phosphates

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Phospholipids

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Photoautotrophs

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Structure and diversity of bacterial, eukaryotic and archaeal communities in glacial cryoconite holes from the Arctic and the Antarctic. FEMS Microbiology Ecology, 82 (2). pp. 254-267. ISSN 0168-6496

Phylogeny

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Pilot scale

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Pipe

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Pipe flow

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Pisum sativum

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Etebu, Ebimieowei and Osborn, A. Mark (2010) Molecular quantification of the pea footrot disease pathogen (Nectria haematococca) in agricultural soils. Phytoparasitica, 38 (5). pp. 447-454. ISSN 0334-2123

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Plant Diseases

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Plasmids

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Plasmids, Bacteria (microorganisms)

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Polymerase Chain Reaction

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Polymorphism, Restriction Fragment Length

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Polysaccharides

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Posibacteria

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Potable water

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Process activities

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Prokaryota

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Protein level

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Proteins

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Proteobacteria

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Proteomics

Graham, Ciaren and Graham, R. L. and McMullan, G. (2011) Proteomics in the microbial sciences. Bioengineered Bugs, 2 (1). pp. 17-30. ISSN 1949-1018

Pseudoalteromonas

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Pseudomonas aeruginosa

Bramston, D. M. and Dixon, Ron (2009) Analysis of textural attachment preferences of Pseudomonas aeruginosa ATCC27853 to blast furnace slag using confocal microscopy. In: 109th General Meeting, American Society for Microbiology, 17 -21 May 2009, Philadelphia, Pennsylvania.

Pyrimidines

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Quantitative PCR

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

RNA

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

RNA 16S

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

RNA 16S, abundance

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

RNA 16S, ammonification

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

RNA 16S, article

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

RNA 16S, bacterium

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

RNA 16S, denitrification

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

RNA 16S, microbial community, agriculture

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

RNA 18S, arbuscular mycorrhiza

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

RNA fingerprinting

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

RNA sequence

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

RNA, Acinetobacter

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

RNA, Antisense

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

RNA, Bacterial

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

RNA, Good agricultural practice (GAP)

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

RNA, Messenger

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

RNA, Polymorphism, Soils, RNA 16S, bacterial disease

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

RNA, Ribosomal, 16S

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

RNA, Ribosomal, 18S

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

RNA, ammonification

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

RNA, amplicon

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

Recombinases

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Recombination, Genetic

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Regression analysis

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Replication Origin

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Reproducibility of Results

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Reverse Transcriptase Polymerase Chain Reaction

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

Reverse transcription

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Ribonuclease

Lancaster, Lorna and Wintermeyer, Wolfgang and Rodnina, Marina (2007) Colicins and their potential in cancer treatment. Blood, Cells, Molecules and Diseases, 38 (1). pp. 15-18. ISSN 1079-9796

Ribosome

Lancaster, Lorna and Savelsbergh, Andreas and Kleanthous, Colin and Wintermeyer, Wolfgang and Rodnina, Marina (2008) Colicin E3 cleavage of 16S rRNA impairs decoding and accelerates tRNA translocation on Escherichia coli ribosomes. Molecular Microbiology, 69 (2). pp. 390-401. ISSN 0950-382X

River Humber

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2008) A survey of the prevalence of Vibrio parahaemolyticus in the River Humber on the East Coast of England. In: 108th American Society of Microbiology (ASM) General Meeting, 1st - 5th June 2008, Boston, USA.

Roseobacter

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

SNAREs

Ferrari, Enrico and Maywood, Elizabeth S. and Restani, Laura and Caleo, Matteo and Pirazzini, Marco and Rossetto, Ornella and Hastings, Michael H. and Niranjan, Dhevahi and Schiavo, Giampietro and Davletov, Bazbek (2011) Re-assembled botulinum neurotoxin inhibits CNS Functions without systemic toxicity. Toxins, 3 (4). pp. 345-355. ISSN 2072-6651

Sampling devices

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Saudi Arabia

Dixon, Ron (2008) Outer membrane protein analysis of ampicillin-resistant isolates of Haemophilus influenzae from Saudi Arabia. Journal of Infection and Public Health, 1 (1). pp. 45-50. ISSN UNSPECIFIED

Seawater

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Sediments

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Sediments, Bacterial community

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Sediments, Gene sequences, Genes, DNA

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Sequence Analysis, DNA

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Sequence Homology, Nucleic Acid

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Sequence Homology, Nucleic Acid, Eurasia

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Shewanella

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Shewanella sp.

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Simultaneous analysis, Biofilms

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Slurry experiment

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Soil

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Soil Microbiology

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Soil Microbiology, Bacteria (microorganisms)

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Soil Pollutants

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Species Specificity

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Species Specificity, Bacteria (microorganisms)

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Sphingomonas

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Sub-Saharan Africa

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Substrate Specificity, Acinetobacter

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Sulfolobus

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Support, Non-U.S. Gov't

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Support, Non-U.S. Gov't, Bacteria (microorganisms)

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Systems Theory

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Taq polymerase, DNA Primers

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Tellurium

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

Temperature, Alcanivorax

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Thailand, Bacteria (microorganisms)

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

Thalassolituus

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

Thalassolituus oleivorans

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Trans-Activators

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Trans-Activators, Bacteria (microorganisms)

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Transcription

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Transcription, Estuarine sediments

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Transcription, Genetic

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

Translation

Lancaster, Lorna and Savelsbergh, Andreas and Kleanthous, Colin and Wintermeyer, Wolfgang and Rodnina, Marina (2008) Colicin E3 cleavage of 16S rRNA impairs decoding and accelerates tRNA translocation on Escherichia coli ribosomes. Molecular Microbiology, 69 (2). pp. 390-401. ISSN 0950-382X

Transposases

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Transposon Resolvases

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Treatment-specific shifts, Biofilms, beta glucosidase

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Trees

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Triticum aestivum

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Triticum, Bacteria (microorganisms)

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Tropical Climate, Africa

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Tuberculosis

Dixon, R. A. (2009) Tuberculosis: molecular diagnosis of past populations. In: IBMS Biomedical Sciences Congress, 28 - 30 September 2009, Birmingham, UK.

Tyrosine, Bacteria (microorganisms)

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

United Kingdom

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

United Kingdom, Bacterial Proteins

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

United Kingdom, Biodegradation, Environmental

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

United States

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

United kingdom, Ammonium compounds

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Upogebia deltaura

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Variation (Genetics)

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Variation (Genetics), Bacteria (microorganisms)

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Variation (Genetics), United Kingdom, Bacteria (microorganisms)

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Variovorax

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

Vibrio

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Vibrio parahaemolyticus

Daramola, Bukola and Dixon, Ron and Williams, D. R. (2008) Antibiotic susceptibility of Vibrio parahaemolyticus: a surveillance study. In: American Society of Microbiology conference on antimicrobial resistance in zoonotic bacteria and foodborne pathogens, 15th - 18th June 2008, Copenhagen, Denmark.

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2009) Antibiotic susceptibility of recent environmental Vibrio parahaemolyticus isolates from the UK. In: Infection 2009 - Federation of Infection Societies, 11th - 13th November 2009, Birmingham, UK.

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2009) Antibiotic susceptibility of recent environmental Vibrio parahaemolyticus isolates from the UK. In: Society for General Microbiology Meeting, 30th March - 2nd April 2009, Harrogate, United Kingdom.

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2009) Environmental distribution and molecular analysis of Vibrio parahaemolyticus isolated from the East Coast region of England. In: Infectious Diseases Society of America Meeting, 29th October - 1st November 2009, Philadelphia, USA.

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2008) Improved detection of environmental Vibrio parahaemolyticus through the use of chromogenic media. In: Society for General Microbiology Meeting, 31st March - 3rd April 2008, Edinburgh.

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2008) A survey of the prevalence of Vibrio parahaemolyticus in the River Humber on the East Coast of England. In: 108th American Society of Microbiology (ASM) General Meeting, 1st - 5th June 2008, Boston, USA.

Daramola, Bukola A. and Williams, Ross and Dixon, Ron A. (2009) In vitro antibiotic susceptibility of Vibrio parahaemolyticus from environmental sources in Northern England. International Journal of Antimicrobial Agents, 34 (5). pp. 499-500. ISSN 0924-8579

Vibrio sp.

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Vibrio, Alphaproteobacteria

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Virulence, Fungi

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Wastewater treatment, Nitrates, ammonia

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Water Microbiology

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Water Microbiology, Bacteria (microorganisms)

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Water Microbiology, Colne Estuary

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Water Pollutants, Chemical, Bacteria (microorganisms)

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Water Pollution, Chemical

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Water Supply, Bacteria (microorganisms)

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Water distribution systems

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Water supply, Biofilters, 4',6 diamidino 2 phenylindole

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Western Europe, Bacillariophyta

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Western Europe, Bacteria (microorganisms)

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Western Europe, Deltaproteobacteria

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

World, Bacteria (microorganisms)

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Wounds

Barnes, K. M. and Gennard, Dorothy and Dixon, Ron (2010) The antibacterial potency of the medicinal maggot Lucilia sericata (Meigen): variation in laboratory evaluation. Journal of Microbiological Methods, 82 (3). pp. 234-237. ISSN 0167-7012

Y-chromosonal STR

Elmrghni, Samir and Dixon, R. A. and Williams, D. R. (2010) Haplotypes for 17 Y-chromosomal STR loci in a population from eastern Libya (Benghazi region). In: 7th International Y Chromosome User Workshop and 4th International EMPOP, 22 - 24 April 2010, Berlin, Germany.

Zea mays

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

ac

Williams , D. Ross and Thomas, Angela E. and Hepburn, Neil C. and Watts, Toni and Dixon, Ron A. (2004) Changes in skin microbiota of patients associated with treatment by Isotretinoin. In: 43rd Interscience Conference on Antimicrobial Agents and Chemotherapy, November 2004, Washington, DC.

acne

Dixon, Ron A. and Thomas, Angela E. and Watts, Toni and Hepburn , Neil C. and Williams, D. Ross (2004) Treatment of acne patients with Isotretinoin: related changes in skin microbiota. In: 6th European Congress of Chemotherapy and Infection, November, 2004, Paris, France.

Thomas, Angela E. and Williams , D. Ross and Hepburn , Neil C. and Watts, Toni and Dixon , Ron A. (2005) Staphylococcal microbiota from the skin of patients: changes associated with treatment by Isotretinoin. In: 15th European Congress of Clinical Microbiology and Infectious Diseases , 01 April to 15 April, 2005, Copenhagen.

Thomas, Angela E. and Williams , D. Ross and Watts , Toni and Hepburn , Neil C. and Dixon , Ron A. (2008) Investigation of the changing colonisation of skin bacteria during isotretinoin treatment for Acne vulgaris. In: Meeting - Society for General Microbiology, 31 March to 01 April 2008, Edinburgh.

acne vulgaris

Ryan-Kewley, Angela E. (2011) Microbial ecology of Propionibacterium acnes in patients undergoing treatment with isotretinoin. PhD thesis, University of Lincoln.

Thomas, A. E. and Williams, D. R. and Watts, T. and Hepburn, N. C . and Dixon, Ron (2008) Investigation into the changing colonisation of skin bacteria during isotretinoin treatment for acne vulgaris. In: Society for General Microbiology Meeting, 31st March - 3rd April 2008, Edinburgh.

active site

Walker, Daniel and Lancaster, Lorna and James, Richard and Kleanthous, Colin (2004) Identification of the catalytic motif of the microbial ribosome inactivating cytotoxin colicin E3. Protein Science, 13 (6). pp. 1603-1611. ISSN 0961-8368

agricultural management

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

agricultural procedures

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

amber

Cotton, G. and Dixon, R. A. (2011) Recovery of 'ancient' microbes from amber: an experimental approach. In: 7th National FORREST Conference, 29 - 30 June 2011, Nottingham, UK.

ammonium

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

ancient DNA

Dixon, Ron and Dawson, Lucy and Taylor, Delia (2008) The experimental degradation of archaeological human bone by anaerobic bacteria and the implications for recovery of ancient DNA. In: The 9th International Conference on Ancient DNA and Associated Biomolecules, 19-22 October 2008, Pompeii, Italy.

antibacterial

Dixon, Ron (2008) Role of the cell envelope in the antibacterial activities of cyclic polypeptides against Eschericia coli. In: 2nd World Conference on Magic Bullets, 3rd - 5th October 2008, Nuremberg, Germany.

antibacterial activity

Barnes, K. M. and Gennard, D. E. and Dixon, R. A. (2009) Investigation into the antibacterial activity in excretion/secretions (ES) from four insects associated with a corpse. In: Royal Entomological Society Meeting, insect infection and immunity, 15 - 17 July 2009, Sheffield, UK.

Barnes, Katherine and Gennard, Dorothy and Dixon, Ron (2008) Differences in the antibacterial activity of Lucilia sericata (M) larval excretion/secretion compared to Calliphora vicina (R-D), Tenebrio molitor (l) and Dermestes maculatus (D). In: 108th American Society of Microbiology (ASM) General Meeting, 1st - 5th June 2008, Boston, USA.

Barnes, Katherine and Gennard, Dorothy and Dixon, Ron (2009) An assessment of the antibacterial activity in larval excretion/secretion from four carrion feeding species using Lucilia sericata (Meigen) as the marker species. In: BSAC Spring Meeting - Difficult to treat infections meeting; British Society of Antimicrobial Chemotherapy, 7th April 2009, Birmingham.

Dixon, R. A. and Baron, Mark (2011) A novel silver colloid: assessment of antibacterial activity. In: 27th International Congress of Chemotherapy, 07 - 10 May 2011, Milan, Italy.

antibacterial potency

Barnes, K. M. and Gennard, Dorothy and Dixon, Ron (2010) The antibacterial potency of the medicinal maggot Lucilia sericata (Meigen): variation in laboratory evaluation. Journal of Microbiological Methods, 82 (3). pp. 234-237. ISSN 0167-7012

antibiotic resistance

Dixon, Ron (2008) Outer membrane protein analysis of ampicillin-resistant isolates of Haemophilus influenzae from Saudi Arabia. Journal of Infection and Public Health, 1 (1). pp. 45-50. ISSN UNSPECIFIED

antibiotic susceptibility

Daramola, Bukola and Dixon, Ron and Williams, D. R. (2008) Antibiotic susceptibility of Vibrio parahaemolyticus: a surveillance study. In: American Society of Microbiology conference on antimicrobial resistance in zoonotic bacteria and foodborne pathogens, 15th - 18th June 2008, Copenhagen, Denmark.

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2009) Antibiotic susceptibility of recent environmental Vibrio parahaemolyticus isolates from the UK. In: Infection 2009 - Federation of Infection Societies, 11th - 13th November 2009, Birmingham, UK.

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2009) Antibiotic susceptibility of recent environmental Vibrio parahaemolyticus isolates from the UK. In: Society for General Microbiology Meeting, 30th March - 2nd April 2009, Harrogate, United Kingdom.

arbuscular mycorrhiza

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

aromatic hydrocarbon

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

article

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

autosomal STR

Elmrghni, Samir and Dixon, R. A. and Williams, D. R. (2011) Genetic data provided by 15 autosomal STR loci in the Libyan population living in Benghazi. In: 7th National FORREST Conference, 29 - 30 June 2011, Nottingham, UK.

autotrophy

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

azoxystrobin

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

bacteria in experimental degradation

Taylor, D. and Dixon, Ron (2010) Destruction of archaeological bone: the role of specific bacteria in experimental degradation of 700 year old human bone. Journal of Nordic Archaeological Sciences . ISSN UNSPECIFIED

bacterial DNA

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

bacterial count

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

bacterial flora

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

bacterial gene

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

bacterial genetics

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

bacterial membranes

Dixon, Ron and Sahalan, Ahmad Z. (2008) Role of the cell envelope in the antibacterial activities of polymyxin B and polymyxin B nonapeptide against Escherichia coli. International Journal of Antimicrobial Agents , 31 (3). pp. 224-227. ISSN 0924-8579

bacterial metabolism

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

bacterial protein

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

bacteriophage

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

bacterium

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

bacterium colony

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

bacterium isolate

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

bacterium isolation

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

benthic environment

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

benthos

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

bioavailability

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

biodegradation

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

biodiversity

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

biofilm

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

biofilms; denaturing gradient gel electrophoresis;drinking water; enumeration; water age; water quality

Sekar, R. and Deines, P. and Machell, J. and Osborn, M. A. and Biggs, C. A. and Boxall, J. B. (2012) Bacterial water quality and network hydraulic characteristics: a field study of a small, looped water distribution system using culture-independent molecular methods. Journal of Applied Microbiology, 112 (6). pp. 1220-1234. ISSN 1364-5072

biomass

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

bioremediation

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

bioturbation

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Laverock, Bonnie and Gilbert, Jack A. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve (2011) Bioturbation: impact on the marine nitrogen cycle. Biochemical Society Transactions, 39 (1). pp. 315-320. ISSN 0300-5127

bladder biopsies

Dixon, Ron and Agarwal, M. (2010) Detection of Escherichia coli DNA from interstitial cystitis bladder biopsies provides little evidence of a causal microbe. The Internet Journal of Urology, 7 (1). ISSN 1528-8390

bmjdoi

Graham, Ciaren and Graham, R. L. and McMullan, G. (2011) Proteomics in the microbial sciences. Bioengineered Bugs, 2 (1). pp. 17-30. ISSN 1949-1018

Hart, M. C. and Elliott, G. N. and Osborn, A. Mark and Ritchie, D. A. and Strike, P. (1998) Erratum: Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil (FEMS Microbiol. Ecol. 27 (1998) (73-84] PII: S0168649698000580). FEMS Microbiology Ecology, 27 (4). p. 395. ISSN 0168-6496

botulinum neurotoxin

Ferrari, Enrico and Maywood, Elizabeth S. and Restani, Laura and Caleo, Matteo and Pirazzini, Marco and Rossetto, Ornella and Hastings, Michael H. and Niranjan, Dhevahi and Schiavo, Giampietro and Davletov, Bazbek (2011) Re-assembled botulinum neurotoxin inhibits CNS Functions without systemic toxicity. Toxins, 3 (4). pp. 345-355. ISSN 2072-6651

burrow

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

cancer

Lancaster, Lorna and Wintermeyer, Wolfgang and Rodnina, Marina (2007) Colicins and their potential in cancer treatment. Blood, Cells, Molecules and Diseases, 38 (1). pp. 15-18. ISSN 1079-9796

carbohydrate

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

carbohydrate derivative

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

carbohydrate metabolism

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

carbon

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

carbon cycle

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

carbon isotope

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

carboxy terminal sequence

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

catalysis

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

causal microbe

Dixon, Ron and Agarwal, M. (2010) Detection of Escherichia coli DNA from interstitial cystitis bladder biopsies provides little evidence of a causal microbe. The Internet Journal of Urology, 7 (1). ISSN 1528-8390

cell envelope

Dixon, Ron (2008) Role of the cell envelope in the antibacterial activities of cyclic polypeptides against Eschericia coli. In: 2nd World Conference on Magic Bullets, 3rd - 5th October 2008, Nuremberg, Germany.

cell level

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

cellular organisms

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

chromogenic media

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2008) Improved detection of environmental Vibrio parahaemolyticus through the use of chromogenic media. In: Society for General Microbiology Meeting, 31st March - 3rd April 2008, Edinburgh.

chromosome

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

classification

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

clinical isolates

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2009) Environmental distribution and molecular analysis of Vibrio parahaemolyticus isolated from the East Coast region of England. In: Infectious Diseases Society of America Meeting, 29th October - 1st November 2009, Philadelphia, USA.

cluster analysis

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

coastal sediment

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

colicin E3

Walker, Daniel and Lancaster, Lorna and James, Richard and Kleanthous, Colin (2004) Identification of the catalytic motif of the microbial ribosome inactivating cytotoxin colicin E3. Protein Science, 13 (6). pp. 1603-1611. ISSN 0961-8368

colonisation

Thomas, A. E. and Williams, D. R. and Watts, T. and Hepburn, N. C . and Dixon, Ron (2008) Investigation into the changing colonisation of skin bacteria during isotretinoin treatment for acne vulgaris. In: Society for General Microbiology Meeting, 31st March - 3rd April 2008, Edinburgh.

community composition

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

community structure

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

comparative study

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

competitive interactions

Barnes, K. M. and Dixon, Ron and Gennard, Dorothy (2009) A model of competitive interactions between L.sericata and pathogenic bacteria found on a corpse. In: European Association of Forensic Entomology, 9th - 12th June 2009, Uppsala, Sweden.

complementary DNA

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

concentration (composition)

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

concentration (parameters)

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

confocal microscopy

Bramston, D. M. and Dixon, Ron (2009) Analysis of textural attachment preferences of Pseudomonas aeruginosa ATCC27853 to blast furnace slag using confocal microscopy. In: 109th General Meeting, American Society for Microbiology, 17 -21 May 2009, Philadelphia, Pennsylvania.

conjugation

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

consensus sequence

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

controlled study

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

crustacean

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

cyclic polypeptides

Dixon, Ron (2008) Role of the cell envelope in the antibacterial activities of cyclic polypeptides against Eschericia coli. In: 2nd World Conference on Magic Bullets, 3rd - 5th October 2008, Nuremberg, Germany.

darkness

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

degradation

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

degradation of 700 year old human bone

Taylor, D. and Dixon, Ron (2010) Destruction of archaeological bone: the role of specific bacteria in experimental degradation of 700 year old human bone. Journal of Nordic Archaeological Sciences . ISSN UNSPECIFIED

denaturing gradient gel electrophoresis

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

denitrification

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

destruction of archaeological bone

Taylor, D. and Dixon, Ron (2010) Destruction of archaeological bone: the role of specific bacteria in experimental degradation of 700 year old human bone. Journal of Nordic Archaeological Sciences . ISSN UNSPECIFIED

detection method

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

diatom

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

dna sequence

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

drinking water

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

drinking water, biofilm

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

drug resistance

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

ecological niche

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

ecology

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

ecosystem

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

electrokinesis

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

electrophoresis

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

endotoxins

Dixon, Ron and Hing, H L and Sahalan, A (2009) Observation of endotoxins neutralization by polymyxin with light microscope. Annals of Microscopy , 9 . pp. 88-92. ISSN UNSPECIFIED

environmental isolates

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2009) Environmental distribution and molecular analysis of Vibrio parahaemolyticus isolated from the East Coast region of England. In: Infectious Diseases Society of America Meeting, 29th October - 1st November 2009, Philadelphia, USA.

environmental monitoring

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

enzyme activity

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

enzyme localization

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

enzyme specificity

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

error

Hart, M. C. and Elliott, G. N. and Osborn, A. Mark and Ritchie, D. A. and Strike, P. (1998) Erratum: Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil (FEMS Microbiol. Ecol. 27 (1998) (73-84] PII: S0168649698000580). FEMS Microbiology Ecology, 27 (4). p. 395. ISSN 0168-6496

escherichia coli

Dixon, Ron and Sahalan, Ahmad Z. (2008) Role of the cell envelope in the antibacterial activities of polymyxin B and polymyxin B nonapeptide against Escherichia coli. International Journal of Antimicrobial Agents , 31 (3). pp. 224-227. ISSN 0924-8579

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

estuarine ecosystem

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

estuarine environment

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

estuarine sediment

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

estuarine species

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

estuary

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

ethanol

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

evolution

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

excretion/secretion

Barnes, K. M. and Gennard, D. E. and Dixon, R. A. (2009) Investigation into the antibacterial activity in excretion/secretions (ES) from four insects associated with a corpse. In: Royal Entomological Society Meeting, insect infection and immunity, 15 - 17 July 2009, Sheffield, UK.

exopolymer

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

expression vector

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

fatty acid

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

fertilizer

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

fertilizer application

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

fluorescence analysis

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

fluorescence in situ hybridization

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

fungal DNA, DNA

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

fungal community

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

fungal disease

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

fungal gene

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

fungal virulence

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

fungicide

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

fungus

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

fungus culture

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

fungus isolation

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

gene

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

gene amplification

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

gene expression

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

gene expression regulation

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

gene function

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

gene identification

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

gene isolation

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

gene library

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

gene pool

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

gene product

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

gene replication

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

gene sequence

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

gene transfer

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

genetic analysis

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

genetic conservation

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

genetic data

Elmrghni, Samir and Dixon, R. A. and Williams, D. R. (2011) Genetic data provided by 15 autosomal STR loci in the Libyan population living in Benghazi. In: 7th National FORREST Conference, 29 - 30 June 2011, Nottingham, UK.

genetic linkage

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

genetic marker

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

genetic polymorphism

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

genetic recombination

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

genetic transcription

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

genetic variability

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

genetic variance

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

genetics

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

genome

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

genotype

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

geographic distribution

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

geography

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

glacial environment

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

glycoprotein

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

gram negative bacterium

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

gram positive bacterium

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

growth inhibition

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

growth, development and aging

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

harvesting

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

helicase

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

helicase, article

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

horizontal gene transfer

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

host

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

hybridization

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

hydrocarbon

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

inoculation

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

insecticide resistance

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

interstitial cystitis

Dixon, Ron and Agarwal, M. (2010) Detection of Escherichia coli DNA from interstitial cystitis bladder biopsies provides little evidence of a causal microbe. The Internet Journal of Urology, 7 (1). ISSN 1528-8390

isolates

Daramola, Bukola and Williams, D. R. and Dixon, Ron (2009) Antibiotic susceptibility of recent environmental Vibrio parahaemolyticus isolates from the UK. In: Infection 2009 - Federation of Infection Societies, 11th - 13th November 2009, Birmingham, UK.

isolation and purification

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

isotope labeling

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

isotretinoin treatment

Thomas, A. E. and Williams, D. R. and Watts, T. and Hepburn, N. C . and Dixon, Ron (2008) Investigation into the changing colonisation of skin bacteria during isotretinoin treatment for acne vulgaris. In: Society for General Microbiology Meeting, 31st March - 3rd April 2008, Edinburgh.

laboratory evaluation

Barnes, K. M. and Gennard, Dorothy and Dixon, Ron (2010) The antibacterial potency of the medicinal maggot Lucilia sericata (Meigen): variation in laboratory evaluation. Journal of Microbiological Methods, 82 (3). pp. 234-237. ISSN 0167-7012

lake water

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

land use

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

larval ES

Barnes, Katherine and Gennard, Dorothy and Dixon, Ron (2009) An assessment of the antibacterial activity in larval excretion/secretion from four carrion feeding species using Lucilia sericata (Meigen) as the marker species. In: BSAC Spring Meeting - Difficult to treat infections meeting; British Society of Antimicrobial Chemotherapy, 7th April 2009, Birmingham.

larval excretion

Barnes, Katherine and Gennard, Dorothy and Dixon, Ron (2008) Differences in the antibacterial activity of Lucilia sericata (M) larval excretion/secretion compared to Calliphora vicina (R-D), Tenebrio molitor (l) and Dermestes maculatus (D). In: 108th American Society of Microbiology (ASM) General Meeting, 1st - 5th June 2008, Boston, USA.

larval secretion

Barnes, Katherine and Gennard, Dorothy and Dixon, Ron (2008) Differences in the antibacterial activity of Lucilia sericata (M) larval excretion/secretion compared to Calliphora vicina (R-D), Tenebrio molitor (l) and Dermestes maculatus (D). In: 108th American Society of Microbiology (ASM) General Meeting, 1st - 5th June 2008, Boston, USA.

legume

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

light exposure

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

management practice

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

marine environment

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

medicinal maggot Lucilia sericata

Barnes, K. M. and Gennard, Dorothy and Dixon, Ron (2010) The antibacterial potency of the medicinal maggot Lucilia sericata (Meigen): variation in laboratory evaluation. Journal of Microbiological Methods, 82 (3). pp. 234-237. ISSN 0167-7012

mercury

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

mercury, antibiotic resistance

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

mercury, article

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

mercury, bacterial metabolism

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

messenger RNA

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

metabolism

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

metabolite

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

metal metabolism

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

methanol extraction residue, article

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

methodology

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

microalga

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

microbe recovery

Cotton, G. and Dixon, R. A. (2011) Recovery of 'ancient' microbes from amber: an experimental approach. In: 7th National FORREST Conference, 29 - 30 June 2011, Nottingham, UK.

microbes

Dixon, Ron and Summerfield , S. and Shaw, M. (2008) Microbes in amber: ancient colonists or modern infiltrates. In: 9th international conference on ancient DNA , 19th - 22nd October 2008, Pompeii, Italy.

microbial activity

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

microbial biomass

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

microbial community

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

microbial community structure

Laverock, Bonnie and Gilbert, Jack A. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve (2011) Bioturbation: impact on the marine nitrogen cycle. Biochemical Society Transactions, 39 (1). pp. 315-320. ISSN 0300-5127

microbial degradation

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

microbial diversity

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

microbial ecology

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

microbial growth

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

microbial metabolism

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

microbial population dynamics

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

microbiology

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

microcosm

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

microflora

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

microscope

Dixon, Ron and Hing, H L and Sahalan, A (2009) Observation of endotoxins neutralization by polymyxin with light microscope. Annals of Microscopy , 9 . pp. 88-92. ISSN UNSPECIFIED

mineralization

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

mode of action

Dixon, Ron and Sahalan, Ahmad Z. (2008) Role of the cell envelope in the antibacterial activities of polymyxin B and polymyxin B nonapeptide against Escherichia coli. International Journal of Antimicrobial Agents , 31 (3). pp. 224-227. ISSN 0924-8579

molecular analysis

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

molecular biology

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

molecular cloning

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

molecular diagnosis

Dixon, R. A. (2009) Tuberculosis: molecular diagnosis of past populations. In: IBMS Biomedical Sciences Congress, 28 - 30 September 2009, Birmingham, UK.

molecular dynamics

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

molecular genetics

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

molecular phylogeny

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

mosaicism

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

multigene family

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

multivariate analysis

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

mutagenesis

Walker, Daniel and Lancaster, Lorna and James, Richard and Kleanthous, Colin (2004) Identification of the catalytic motif of the microbial ribosome inactivating cytotoxin colicin E3. Protein Science, 13 (6). pp. 1603-1611. ISSN 0961-8368

napA gene

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

narG gene

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

nervous system

Ferrari, Enrico and Maywood, Elizabeth S. and Restani, Laura and Caleo, Matteo and Pirazzini, Marco and Rossetto, Ornella and Hastings, Michael H. and Niranjan, Dhevahi and Schiavo, Giampietro and Davletov, Bazbek (2011) Re-assembled botulinum neurotoxin inhibits CNS Functions without systemic toxicity. Toxins, 3 (4). pp. 345-355. ISSN 2072-6651

nirS gene

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

nitrate

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

nitrate reductase

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

nitrite

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

nitrite reductase

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

nitrogen

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

nitrogen cycle

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Laverock, Bonnie and Gilbert, Jack A. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve (2011) Bioturbation: impact on the marine nitrogen cycle. Biochemical Society Transactions, 39 (1). pp. 315-320. ISSN 0300-5127

nonhuman

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

nontarget organism

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

note

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

nrfa gene

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

nucleotide sequence

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

nutrient availability

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

nutrient cycling

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

nutrient flux

Laverock, Bonnie and Gilbert, Jack A. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve (2011) Bioturbation: impact on the marine nitrogen cycle. Biochemical Society Transactions, 39 (1). pp. 315-320. ISSN 0300-5127

oligonucleotide

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

oligonucleotide probe

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

oligonucleotide, amino acid sequence

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

operator gene

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

operon

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

oxic/anoxic interface

Laverock, Bonnie and Gilbert, Jack A. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve (2011) Bioturbation: impact on the marine nitrogen cycle. Biochemical Society Transactions, 39 (1). pp. 315-320. ISSN 0300-5127

pathogenic bacteria

Barnes, K. M. and Dixon, Ron and Gennard, Dorothy (2009) A model of competitive interactions between L.sericata and pathogenic bacteria found on a corpse. In: European Association of Forensic Entomology, 9th - 12th June 2009, Uppsala, Sweden.

pathogenicity

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

pea

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

persistence

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

pesticide

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

pesticide, 25s rrna gene

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

petroleum

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

petroleum, Alcanivorax

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

phenotype

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

phosphate

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

phospholipid

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

photosynthesis

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

phylogenetics

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

phylogeny

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

physical property

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

physiology

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

phytobenthos

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

plant disease

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

plasmid

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

plasmid dna

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

plowing

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

pollutant, Alcanivoraceae

McKew, Boyd A. and Coulon, Frederic and Yakimov, Michail M. and Denaro, Renata and Genovese, Maria and Smith, Cindy J. and Osborn, A. Mark and Timmis, Kenneth N. and McGenity, Terry J. (2007) Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria. Environmental Microbiology, 9 (6). pp. 1562-1571. ISSN 1462-2912

pollution

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

polyacrylamide gel electrophoresis

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

polychlorinated biphenyl

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

polymer, Bacteria (microorganisms)

Hofmann, Tanja and Hanlon, Astrid R. M. and Taylor, Joe D. and Ball, Andrew S. and Osborn, A. Mark and Underwood, Graham J. C. (2009) Dynamics and compositional changes in extracellular carbohydrates in estuarine sediments during degradation. Marine Ecology Progress Series, 379 . pp. 45-58. ISSN 0171-8630

polymerase chain reaction

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

polymerase chain reaction, agricultural land

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

polymerase chain reaction, article

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

polymorphism

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

polymyxin

Dixon, Ron and Sahalan, Ahmad Z. (2008) Role of the cell envelope in the antibacterial activities of polymyxin B and polymyxin B nonapeptide against Escherichia coli. International Journal of Antimicrobial Agents , 31 (3). pp. 224-227. ISSN 0924-8579

polymyxin B

Dixon, Ron and Hing, H L and Sahalan, A (2009) Observation of endotoxins neutralization by polymyxin with light microscope. Annals of Microscopy , 9 . pp. 88-92. ISSN UNSPECIFIED

polymyxin nonapeptide

Dixon, Ron and Sahalan, Ahmad Z. (2008) Role of the cell envelope in the antibacterial activities of polymyxin B and polymyxin B nonapeptide against Escherichia coli. International Journal of Antimicrobial Agents , 31 (3). pp. 224-227. ISSN 0924-8579

polysaccharide

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

population

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

primary production

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

primer DNA, abundance

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

primer DNA, article

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

principal component analysis

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

priority journal

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Hart, M. C. and Elliott, G. N. and Osborn, A. Mark and Ritchie, D. A. and Strike, P. (1998) Erratum: Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil (FEMS Microbiol. Ecol. 27 (1998) (73-84] PII: S0168649698000580). FEMS Microbiology Ecology, 27 (4). p. 395. ISSN 0168-6496

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

productivity

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

promoter region

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

protein

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

protein engineering

Ferrari, Enrico and Maywood, Elizabeth S. and Restani, Laura and Caleo, Matteo and Pirazzini, Marco and Rossetto, Ornella and Hastings, Michael H. and Niranjan, Dhevahi and Schiavo, Giampietro and Davletov, Bazbek (2011) Re-assembled botulinum neurotoxin inhibits CNS Functions without systemic toxicity. Toxins, 3 (4). pp. 345-355. ISSN 2072-6651

qualitative analysis

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

quantitative analysis

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

real time polymerase chain reaction

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

recombinase

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

recovery bone

Dixon, Ron and Dawson, Lucy and Taylor, Delia (2008) The experimental degradation of archaeological human bone by anaerobic bacteria and the implications for recovery of ancient DNA. In: The 9th International Conference on Ancient DNA and Associated Biomolecules, 19-22 October 2008, Pompeii, Italy.

reduction

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

regulator gene

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1995) Sequence conservation between regulatory mercury resistance genes in bacteria from mercury polluted and pristine environments. Systematic and Applied Microbiology, 18 (1). pp. 1-6. ISSN 0723-2020

relative abundance

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

replicon

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

reproducibility

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

resolvase

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

resolvase, adaptation

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

restriction enzyme analysis

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

restriction fragment

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

restriction fragment length polymorphism

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

reverse transcription polymerase chain reaction

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

review, Bacillus

Hart, M. C. and Elliott, G. N. and Osborn, A. Mark and Ritchie, D. A. and Strike, P. (1998) Erratum: Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil (FEMS Microbiol. Ecol. 27 (1998) (73-84] PII: S0168649698000580). FEMS Microbiology Ecology, 27 (4). p. 395. ISSN 0168-6496

review, DNA Transposable Elements

Osborn, A. Mark and Bruce, Kenneth D. and Strike, Peter and Ritchie, Donald A. (1997) Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon. FEMS Microbiology Reviews, 19 (4). pp. 239-262. ISSN 0168-6445

ribonuclease

Walker, Daniel and Lancaster, Lorna and James, Richard and Kleanthous, Colin (2004) Identification of the catalytic motif of the microbial ribosome inactivating cytotoxin colicin E3. Protein Science, 13 (6). pp. 1603-1611. ISSN 0961-8368

ribosomal

Walker, Daniel and Lancaster, Lorna and James, Richard and Kleanthous, Colin (2004) Identification of the catalytic motif of the microbial ribosome inactivating cytotoxin colicin E3. Protein Science, 13 (6). pp. 1603-1611. ISSN 0961-8368

ribosome DNA

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

ribosome RNA

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Dong, Liang F. and Smith, Cindy J. and Papaspyrou, Sokratis and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne estuary, United Kingdom). Applied and Environmental Microbiology, 75 (10). pp. 3171-3179. ISSN 0099-2240

salinity

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

sampling

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

screening

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

sea water, article

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

seashore

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

seasonal variation

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

sediment

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

sediment analysis

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

sediment, Animals

Haynes, K. and Hofmann, T. A. and Smith, C. J. and Ball, A. S. and Underwood, G. J. C. and Osborn, A. M. (2007) Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Applied and Environmental Microbiology, 73 (19). pp. 6112-6124. ISSN 0099-2240

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

sediment, Bacteria

Nogales, Balbina and Timmis, Kenneth N. and Nedwell, David B. and Osborn, A. M. (2002) Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Applied and Environmental Microbiology, 68 (10). pp. 5017-5025. ISSN 0099-2240

sediment-water interface

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

sequence analysis

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

sequence analysis, Bacillus licheniformis

Mason, Vince P. and Syrett, Natalie and Hassanali, Tasneem and Osborn, A. Mark (2002) Diversity and linkage of replication and mobilisation genes in Bacillus rolling circle-replicating plasmids from diverse geographical origins. FEMS Microbiology Ecology, 42 (2). pp. 235-241. ISSN 0168-6496

sequence analysis, Bacteria

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

sequence homology

Cook, M. A. and Osborn, A. M. and Bettandorff, J. and Sobecky, P. A. (2001) Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities. Microbiology, 147 (8). pp. 2089-2101. ISSN 1350-0872

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

sequence homology, Amino Acid Sequence

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

sequence homology, Base Sequence

Osborn, A. M. and da Silva Tatley, F. M. and Steyn, L. M. and Pickup, R. W. and Saunders, J. R. (2000) Mosaic plasmids and mosaic replicons: Evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology, 146 (9). pp. 2267-2275. ISSN 1350-0872

shear stress

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

short survey, Ecology

Smith, Cindy J. and Osborn, A. Mark (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiology Ecology, 67 (1). pp. 6-20. ISSN 0168-6496

silver colloid

Dixon, R. A. and Baron, Mark (2011) A novel silver colloid: assessment of antibacterial activity. In: 27th International Congress of Chemotherapy, 07 - 10 May 2011, Milan, Italy.

skin bacteria

Thomas, A. E. and Williams, D. R. and Watts, T. and Hepburn, N. C . and Dixon, Ron (2008) Investigation into the changing colonisation of skin bacteria during isotretinoin treatment for acne vulgaris. In: Society for General Microbiology Meeting, 31st March - 3rd April 2008, Edinburgh.

soil

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

soil analysis, Agriculture

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

soil microflora

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

soil microflora, Base Sequence

Bruce, K. D. and Hiorns, W. D. and Hobman, J. L. and Osborn, A. M. and Strike, P. and Ritchie, D. A. (1992) Amplification of DNA from native populations of soil bacteria by using the polymerase chain reaction. Applied and Environmental Microbiology, 58 (10). pp. 3413-3416. ISSN 0099-2240

soil microorganism

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

soil pollutant

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

soil pollution

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

Osborn, A. Mark and Moore, Edward R. B. and Timmis, Kenneth N. (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environmental Microbiology, 2 (1). pp. 39-50. ISSN 1462-2912

soil pollution, Bacillus sp.

Hart, Mark C. and Elliott, Geoff N. and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter (1998) Diversity amongst Bacillus merA genes amplified from mercury resistant isolates and directly from mercury polluted soil. FEMS Microbiology Ecology, 27 (1). pp. 73-84. ISSN 0168-6496

soil pollution, Base Sequence

Osborn, A. M. and Bruce, K. D. and Strike, P. and Ritchie, D. A. (1993) Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization. Applied and Environmental Microbiology, 59 (12). pp. 4024-4030. ISSN 0099-2240

soil pollution, Biodegradation, Environmental

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

soil type, agriculture

Girvan, Martina S. and Bullimore, Juliet and Pretty, Jules N. and Osborn, A. Mark and Ball, Andrew S. (2003) Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology, 69 (3). pp. 1800-1809. ISSN 0099 2240

soil, Agriculture

Etebu, E. and Osborn, A. M. (2009) Molecular assays reveal the presence and diversity of genes encoding pea footrot pathogenicity determinants in nectria haematococca and in agricultural soils. Journal of Applied Microbiology, 106 (5). pp. 1629-1639. ISSN 1364-5072

species diversity

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

species diversity, agricultural species

Smith, C. J. and Nedwell, D. B. and Dong, L. F. and Osborn, A. M. (2007) Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Applied and Environmental Microbiology, 73 (11). pp. 3612-3622. ISSN 0099-2240

species diversity, animal

Laverock, Bonie and Smith, Cindy J. and Tait, Karen and Osborn, A. Mark and Widdicombe, Steve and Gilbert, Jack A. (2010) Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal, 4 (12). pp. 1531-1544. ISSN 1751-7362

species endemicity

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

species habitat

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

species richness, Bacteria

Prosser, J. I. and Bohannan, B. J. M. and Curtis, T. P. and Ellis, R. J. and Firestone, M. K. and Freckleton, R. P. and Green, J. L. and Green, L. E. and Killham, K. and Lennon, J. J. and Osborn, A. M. and Solan, M. and van der Gast, C. J. and Young, J. P. W. (2007) The role of ecological theory in microbial ecology. Nature Reviews Microbiology, 5 (5). pp. 384-392. ISSN 1740-1526

standard, DNA, Complementary

Smith, Cindy J. and Nedwell, David B. and Dong, Liang F. and Osborn, A. Mark (2006) Evaluation of quantitative polymerase chain reaction-based approaches for determining gene copy and gene transcript numbers in environmental samples. Environmental Microbiology, 8 (5). pp. 804-815. ISSN 1462-2912

stramenopiles

Cameron, Karen A. and Hodson, Andrew J. and Osborn, A. Mark (2012) Carbon and nitrogen biogeochemical cycling potentials of supraglacial cryoconite communities. Polar Biology, 35 (9). pp. 1375-1393. ISSN 0722-4060

summer

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

synapse

Ferrari, Enrico and Maywood, Elizabeth S. and Restani, Laura and Caleo, Matteo and Pirazzini, Marco and Rossetto, Ornella and Hastings, Michael H. and Niranjan, Dhevahi and Schiavo, Giampietro and Davletov, Bazbek (2011) Re-assembled botulinum neurotoxin inhibits CNS Functions without systemic toxicity. Toxins, 3 (4). pp. 345-355. ISSN 2072-6651

technique, Bacteria

Osborn, A. Mark and Pickup, Roger W. and Saunders, Jon R. (2000) Development and application of molecular tools in the study of IncN-related plasmids from lakewater sediments. FEMS Microbiology Letters, 186 (2). pp. 203-208. ISSN 0378-1097

tellurite

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

temperature

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

McKew, B. A. and Coulon, F. and Osborn, A. M. and Timmis, K. N. and McGenity, T. J. (2007) Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. Environmental Microbiology, 9 (1). pp. 165-176. ISSN 1462-2912

textural attachment preferences

Bramston, D. M. and Dixon, Ron (2009) Analysis of textural attachment preferences of Pseudomonas aeruginosa ATCC27853 to blast furnace slag using confocal microscopy. In: 109th General Meeting, American Society for Microbiology, 17 -21 May 2009, Philadelphia, Pennsylvania.

tidal cycle, Colne Estuary

Hanlon, A. R. M. and Bellinger, B. and Haynes, K. and Xiao, G. and Hofmann, T. A. and Gretz, M. R. and Ball, A. S. and Osborn, A. M. and Underwood, G. J. C. (2006) Dynamics of extracellular polymeric substance (EPS) production and loss in an estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period. Limnology and Oceanography, 51 (1 I). pp. 79-93. ISSN 0024-3590

toxicity test, article

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

toxicity, Crystallization

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

trans acting factor, article

Osborn, A. M. and Bruce, K. D. and Ritchie, D. A. and Strike, P. (1996) The mercury resistance operon of the IncJ plasmid pMERPH exhibits structural and regulatory divergence from other Gram-negative mer operons. Microbiology, 142 (2). pp. 337-345. ISSN 1350-0872

transposase, article

Pearson, A. J. and Bruce, K. D. and Osborn, A. M. and Ritchie, D. A. and Strike, P. (1996) Distribution of class II transposase and resolvase genes in soil bacteria and their association with mer genes. Applied and Environmental Microbiology, 62 (8). pp. 2961-2965. ISSN 0099-2240

transposon

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

transposon, Bacteriophages

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

transposons

Osborn, A. Mark and Boltner, Dietmar (2002) When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum. Plasmid, 48 (3). pp. 202-212. ISSN 0147-619X

tree

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

tropic climate, Agriculture

Bossio, D. A. and Girvan, M .S. and Verchot, L. and Bullimore, J. and Borelli, T. and Albrecht, A. and Scow, K. M. and Ball, A. S. and Pretty, J. N. and Osborn, Mark (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecology, 49 (1). pp. 50-62. ISSN 0095-3628

tropical region

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

unclassified drug, article

Lloyd-Jones, Gareth and Osborn, A. Mark and Ritchie, Donald A. and Strike, Peter and Hobman, Jon L. and Brown, Nigel L. and Rouch, Duncan A. (1994) Accumulation and intracellular fate of tellurite in tellurite-resistant Escherichia coli: a model for the mechanism of resistance. FEMS Microbiology Letters, 118 (1-2). pp. 113-119. ISSN 0378-1097

unclassified drug, bacterium

Adetutu, E. M. and Ball, A. S. and Osborn, A. M. (2008) Azoxystrobin and soil interactions: degradation and impact on soil bacterial and fungal communities. Journal of Applied Microbiology, 105 (6). pp. 1777-1790. ISSN 1364 5072

water column, Fiji

Dong, Liang F. and Sobey, Milika Naqasima and Smith, Cindy J. and Rusmana, Iman and Phillips, Wayne and Stott, Andrew and Osborn, A. Mark and Nedwell, David B. (2011) Dissimilatory reduction of nitrate to ammonium, not denitrification or anammox, dominates benthic nitrate reduction in tropical estuaries. Limnology and Oceanography, 56 (1). pp. 279-291. ISSN 0024-3590

water pollutant, Bacteria

Coulon, Frederic and McKew, Boyd A. and Osborn, A. Mark and McGenity, Terry J. and Timmis, Kenneth N. (2007) Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environmental Microbiology, 9 (1). pp. 177-186. ISSN 1462-2912

water pollution, Bacteria

Bruce, K. D. and Osborn, A. M. and Pearson, A. J. and Strike, P. and Ritchie, D. A. (1995) Genetic diversity within mer genes directly amplified from communities of noncultivated soil and sediment bacteria. Molecular Ecology, 4 (5). pp. 605-612. ISSN 0962-1083

water sampling

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

water supply, Bacteria

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

water supply, article

Deines, Peter and Sekar, Raju and Husband, P. Stewart and Boxall, Joby B. and Osborn, A. Mark and Biggs, Catherine A. (2010) A new coupon design for simultaneous analysis of in situ microbial biofilm formation and community structure in drinking water distribution systems. Applied Microbiology and Biotechnology, 87 (2). pp. 749-756. ISSN 0175-7598

wheat

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

winter, Agriculture

Girvan, Martina S. and Bullimore, Juliet and Ball, Andrew S. and Pretty, Jules N. and Osborn, A. Mark (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Applied and Environmental Microbiology, 70 (5). pp. 2692-2701. ISSN 0099-2240

This list was generated on Thu Apr 24 07:28:24 2014 BST.